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Editor-in-Chief
Melissa Norton, MD Biology Editor
Penelope Webb, PhD In-house Editor
Tim Sands PhD
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 BMC Systems Biology, Volume 3
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Methodology article
 
Spectral affinity in protein networks
Konstantin Voevodski, Shang-Hua Teng, Yu Xia
BMC Systems Biology 2009, 3:112 (29November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
An evaluation of minimal cellular functions to sustain a bacterial cell
Yusuke Azuma, Motonori Ota
BMC Systems Biology 2009, 3:111 (28November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis
Shun-Fu Chen, Yue-Li Juang, Wei-Kang Chou, Jin-Mei Lai, Chi-Ying F Huang, Cheng-Yan Kao, Feng-Sheng Wang
BMC Systems Biology 2009, 3:110 (27November2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Software
DASMiner: discovering and integrating data from DAS sources
Diogo FT Veiga, Helena F Deus, Caner Akdemir, Ana Tereza R Vasconcelos, Jonas S Almeida
BMC Systems Biology 2009, 3:109 (17November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase
Carmen Pin, Matthew D Rolfe, Marina Mu oz-Cuevas, Jay CD Hinton, Michael W Peck, Nicholas J Walton, J zsef Baranyi
BMC Systems Biology 2009, 3:108 (16November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model
Nadav S Bar, Nicole Radde
BMC Systems Biology 2009, 3:107 (10November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Using the ratio of means as the effect size measure in combining results of microarray experiments
Pingzhao Hu, Celia MT Greenwood, Joseph Beyene
BMC Systems Biology 2009, 3:106 (5November2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides
Mark AJ Roberts, Elias August, Abdullah Hamadeh, Philip K Maini, Patrick E McSharry, Judith P Armitage, Antonis Papachristodoulou
BMC Systems Biology 2009, 3:105 (31October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
13C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose
Paula Jouhten, Esa Pitk nen, Tiina Pakula, Markku Saloheimo, Merja Penttil, Hannu Maaheimo
BMC Systems Biology 2009, 3:104 (29October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Inferring branching pathways in genome-scale metabolic networks
Esa Pitkanen, Paula Jouhten, Juho Rousu
BMC Systems Biology 2009, 3:103 (29October2009)
[Abstract] [Provisional PDF] [PubMed] [Related articles]
Research article
How to identify essential genes from molecular networks?
Gabriel del Rio, Dirk Kosch tzki, Gerardo Coello
BMC Systems Biology 2009, 3:102 (13October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments
Ramon Grima
BMC Systems Biology 2009, 3:101 (8October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway
Richard J Orton, Michiel E Adriaens, Amelie Gormand, Oliver E Sturm, Walter Kolch, David R Gilbert
BMC Systems Biology 2009, 3:100 (5October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Software
An editor for pathway drawing and data visualization in the Biopathways Workbench
Robert W Byrnes, Dawn Cotter, Andreia Maer, Joshua Li, David Nadeau, Shankar Subramaniam
BMC Systems Biology 2009, 3:99 (2October2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Methodology article
Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling
Dominik M Wittmann, Jan Krumsiek, Julio Saez-Rodriguez, Douglas A Lauffenburger, Steffen Klamt, Fabian J Theis
BMC Systems Biology 2009, 3:98 (28September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection
Nicole Philippi, Dorothee Walter, Rebekka Schlatter, Karine Ferreira, Michael Ederer, Oliver Sawodny, Jens Timmer, Christoph Borner, Thomas Dandekar
BMC Systems Biology 2009, 3:97 (22September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
The capacity for multistability in small gene regulatory networks
Dan Siegal-Gaskins, Erich Grotewold, Gregory D Smith
BMC Systems Biology 2009, 3:96 (21September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
A method for determining the robustness of bio-molecular oscillator models
Reza Ghaemi, Jing Sun, Pablo A Iglesias, Domitilla Del Vecchio
BMC Systems Biology 2009, 3:95 (21September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis
Yves Fomekong-Nanfack, Marten Postma, Jaap A Kaandorp
BMC Systems Biology 2009, 3:94 (21September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
Research article
Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Pierre R Bushel, Nicholas A Heard, Roee Gutman, Liwen Liu, Shyamal D Peddada, Saumyadipta Pyne
BMC Systems Biology 2009, 3:93 (16September2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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