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Open Access Methodology article

MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples

Vladimir Trifonov12*, Laura Pasqualucci34, Riccardo Dalla Favera345 and Raul Rabadan12

Author Affiliations

1 Department of Biomedical Informatics, New York, NY, 10032, USA

2 Center for Computational Biology and Bioinformatics, New York, NY, 10032, USA

3 Institute for Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA

4 Department of Pathology and Cell Biology, Columbia University, New York, NY, 10032, USA

5 Department of Genetics and Development, and Department of Microbiology and Immunology, Columbia University, New York, NY, 10032, USA

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BMC Systems Biology 2013, 7:25  doi:10.1186/1752-0509-7-25

Published: 25 March 2013

Additional files

Additional file 1:

ComFocal: top 25 amplified regions.

Format: TXT Size: 2KB Download file

Open Data

Additional file 2:

ComFocal: top 25 deleted regions.

Format: TXT Size: 1KB Download file

Open Data

Additional file 3:

MutComFocal: top 25 amplification/mutation regions.

Format: TXT Size: 1KB Download file

Open Data

Additional file 4:

MutComFocal: top 25 deletion/mutation regions.

Format: TXT Size: 1KB Download file

Open Data

Additional file 5:

GISTIC amplifications.

Format: PDF Size: 16KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 6:

GISTIC deletions.

Format: PDF Size: 15KB Download file

This file can be viewed with: Adobe Acrobat Reader

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Additional file 7:

GISTIC probe scores.

Format: TXT Size: 196KB Download file

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Additional file 8:

GISTIC peak amplifications scores.

Format: TXT Size: 9KB Download file

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Additional file 9:

GISTIC peak deletions scores.

Format: TXT Size: 4KB Download file

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Additional file 10:

GISTIC: top 25 probe level amplification regions.

Format: TXT Size: 10KB Download file

Open Data

Additional file 11:

GISTIC: top 25 peak level amplification regions.

Format: TXT Size: 8KB Download file

Open Data

Additional file 12:

GISTIC: top 25 probe level deletion regions.

Format: TXT Size: 10KB Download file

Open Data

Additional file 13:

GISTIC: top 25 peak level deletion regions.

Format: TXT Size: 3KB Download file

Open Data

Additional file 14:

GISTIC/ComFocal comparison for probe level amplifications.

Format: TXT Size: 1KB Download file

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Additional file 15:

GISTIC/ComFocal comparison for probe level deletions.

Format: TXT Size: 1KB Download file

Open Data

Additional file 16:

GISTIC/ComFocal comparison for peak level amplifications.

Format: TXT Size: 1KB Download file

Open Data

Additional file 17:

GISTIC/ComFocal comparison for peak level deletions.

Format: TXT Size: 1KB Download file

Open Data