Table 2

Common DNA methylated genes across stages
Stages DNA methylated genes
Number List of genes
Common DNA methylated genes across the three stages 34 AJAP1, ATP8A2, CCDC140, CNTP2, CYYR1, EVX1, FERD3L, FOXG1, GRIK3, GRM6, HAND2, HOXA9, HOXB4, HOXD4, HOXD9, HOXD12, INPP5B, OTX2, KRTAP8-1, MMP26, PHOX2A, PLEKHA6, POU4F2, PRAC, PRKCB, PTGDR, REG3A, SIX6, SLC6A2, SPAG6, TBX20, TLX3, TMEM130, ZNF560
Common DNA methylated genes across Stage I & II 12 ADCY4, BHMT, C12orf34, CDO1, LVRN, LY96, MSC, PCDHGA12, POU3F3, ZNF154, ZNF577, IHH
Common DNA methylated genes across Stage II & III 30 BARHL2, C10orf81, CCDC140, DEFB119, DIO3, FAM135B, FAM83A, GRIK2, HOXA4, HOXD10, HS3ST2, KCNS2, KRTAP15-1, LEP, LHX1, LYPD5, MAGEB6, NEUROG1, NKX6-2, OR5I1, SERPINB5, SPHKAP, TAL1, TBX4, TBX5, TCN1, TMEM132D, VSX1, ZNF454, IGKV7-3
Common hypermethylated genes across Stage I and Stage III 42 AJAP1, ATP8A2, CCDC140, CNTP2, CYYR1, EVX1, FERD3L, FOXG1, FOXI2, GALR1, GAS7, GRIK2, GRM6, HAND2, HLA-G, HOXA7, HOXA9, HOXB4, HOXD4, HOXD8, HOXD9, HOXD12, INPP5B, NID2, NPY, OTX2, PAX7, PHOX2A, PLEKHA6, POU4F2, PRAC, PRKCB, PTGDR, SIX6, SLC6A2, SOX17, SPAG6, TBX20, TLX3, TMEM130, VIPR2, ZNF560
Common hypomethylated genes across Stage I and Stage III 4 CORO6, MMP26, REG3A, KRTAP8-1

Pradhan et al.

Pradhan et al. BMC Systems Biology 2013 7:141   doi:10.1186/1752-0509-7-141

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