Table 3

Performance comparison on Gavin_2006 with GO-CC

PPI networks

Gavin_2006

Evaluation Metric

MCL

MCODE

CFinder

COACH

CODEC-w0

CODEC-w1

Our method


Sensitivity

0.655

0.333

0.358

0.549

0.524

0.529

0.420

PPV

0.241

0.337

0.335

0.107

0.314

0.405

0.648

Accuracy

0.397

0.335

0.346

0.242

0.406

0.463

0.522

Complex-wise Homogeneity

0.164

0.140

0.087

0.050

0.249

0.288

0.350

Cluster-wise Homogeneity

0.845

0.746

0.536

0.027

0.098

0.123

0.800

Homogeneity

0.373

0.323

0.216

0.036

0.156

0.188

0.529


Cai et al. BMC Systems Biology 2012 6(Suppl 3):S4   doi:10.1186/1752-0509-6-S3-S4

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