Table 4

Summary of overlapping gene pair proportions.

H. sapiens

KEGG vs WikiPathways

WikiPathways vs HumanCyc

HumanCyc vs KEGG


Overlap Gene Pairs

1198

468

1,270

Unique Gene Pairs

45,205

23,060

32,987

Jaccard Coefficient

0.026

0.020

0.037


M.musculus

KEGG vs WikiPathways

WikiPathways vs MouseCyc

MouseCyc vs KEGG


Overlap Gene Pairs

875

1,242

2,068

Unique Gene Pairs

55,489

33,312

38,891

Jaccard Coefficient

0.016

0.036

0.050


S.cerevisiae

KEGG vs WikiPathways

WikiPathways vs YeastCyc

YeastCyc vs KEGG


Overlap Gene Pairs

35

9

419

Unique Gene Pairs

2,909

1,479

3,524

Jaccard Coefficient

0.012

0.006

0.106


M.tuberculosisH37Rv

KEGG vs WikiPathways

WikiPathways vs MTBRvCyc

MTBRvCyc vs KEGG


Overlap Gene Pairs

9

8

358

Unique Gene Pairs

3,819

2,810

5,823

Jaccard Coefficient

0.002

0.003

0.058


Summary of the number of overlap gene pairs, number of unique gene pairs, and Jaccard coefficient among three representative databases.

Zhou et al. BMC Systems Biology 2012 6(Suppl 2):S2   doi:10.1186/1752-0509-6-S2-S2

Open Data