Figure 1.

Construction of models prior to their simulations via built-in ChemChains. The bio-logic for each species (defined by users) is converted (automatically) to a mathematical (Boolean) expression. Each species’ expression is encoded to a C++ file, and all files are subsequently compiled into a single dynamic library (.so file) which can be read and executed by ChemChains for simulations.

Helikar et al. BMC Systems Biology 2012 6:96   doi:10.1186/1752-0509-6-96
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