Table 4

Constraints for metabolite uptake rates used for model simulation, and the comparison of the predicted growth rate by thein silicomodel and observed growth rate from the experiments in each growth condition
Growth conditions Constraints of consumed metabolites (mmol/mmol dry cell/h) Maximal specific growth rate (1/h)
Bicarbonate Phosphate Nitrate* Sulfate* Glucose** In silico In vivo
Autotrophic 0.20 0-0.0056 0-0.040 0-0.0014 0 0.0257 0.0255
Heterotrophic 0 0-0.0056 0-0.040 0-0.0014 0.017 0 0
Mixotrophic 0.20 0-0.0056 0-0.040 0-0.0014 0.017 0.0334 0.0262

* data from ref. 38.

** data from ref. 39.

Klanchui et al.

Klanchui et al. BMC Systems Biology 2012 6:71   doi:10.1186/1752-0509-6-71

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