Open Access Research article

iAK692: A genome-scale metabolic model of Spirulina platensis C1

Amornpan Klanchui1, Chiraphan Khannapho1, Atchara Phodee2, Supapon Cheevadhanarak3 and Asawin Meechai2*

Author Affiliations

1 Systems Biology and Bioinformatics Research Group, Biochemical and Pilot Plant Research and Development Unit, King Mongkut’s University of Technology Thonburi, National Center for Genetic Engineering and Biotechnology, Bangkok, Thailand

2 Department of Chemical Engineering, Faculty of Engineering, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand

3 Devision of Biotechnology, School of Bioresources and Technology, King Mongkut’s University of Technology Thonburi, Bangkok, Thailand

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BMC Systems Biology 2012, 6:71  doi:10.1186/1752-0509-6-71

Published: 15 June 2012

Additional files

Additional file 1:

Additional file 1iAK692 model. Excel file containing a list of the biochemical reactions in the final version of the metabolic network reconstruction, iAK692.

Format: XLS Size: 398KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 2:

Additional file 2: Fluxome distribution under three different growth simulations. This Excel file contains a list of all flux distribution (in mmol/mmol dry cell/h) profiles under the autotrophic, heterotrophic, and mixotrophic culture conditions.

Format: XLS Size: 204KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 3:

Additional file 3: Flux variability analysis. Excel file contains flux variability of the entire metabolic network for autotrophic and mixotrophic growths.

Format: XLS Size: 232KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 4:

Additional file 4: Gene deletion analysis using MOMA approach inS.platensisC1 metabolic model. Excel file contains the grRatio, grRateKO and grRateWT values for S. platensis C1 single gene deletion during autotrophic and mixotrophic growths.

Format: XLS Size: 227KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 5:

Additional file 5: SBML Model for the autotrophic simulation.This file contains the stoichiometric iAK692 model in the SBML format with all of the constraints needed for simulation using the COBRA toolbox.

Format: XML Size: 1MB Download file

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Additional file 6:

Additional file 6: SBML Model for the autotrophic simulation.This file contains the stoichiometric iAK692 model in the SBML format with all of the constraints needed for simulation using the COBRA toolbox.

Format: XML Size: 1MB Download file

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Additional file 7:

Additional file 7: SBML Model for the autotrophic simulation.This file contains the stoichiometric iAK692 model in the SBML format with all of the constraints needed for simulation using the COBRA toolbox.

Format: XML Size: 1MB Download file

Open Data