Table 2

Reaction network capturing synthetic ecosystem’s behavior
# Reaction Reaction rate Kinetic constant
1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M1','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M1">View MathML</a>c1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M2','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M2">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M3','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M3">View MathML</a>[18,21]
2 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M4','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M4">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M5','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M5">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M6','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M6">View MathML</a>[19], <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M7','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M7">View MathML</a>[18,21]
3 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M8','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M8">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M9','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M9">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M10','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M10">View MathML</a>[19], <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M11','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M11">View MathML</a>
4 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M12','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M12">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M13','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M13">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M14','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M14">View MathML</a>[19], <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M15','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M15">View MathML</a>
5 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M16','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M16">View MathML</a> k4·c1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M17','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M17">View MathML</a>[18]
6 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M18','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M18">View MathML</a> k5·c2 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M19','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M19">View MathML</a>[18]
7 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M20','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M20">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M21','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M21">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M22','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M22">View MathML</a>[26], <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M23','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M23">View MathML</a>[49],
Na = 6.023 · 1023
8 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M24','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M24">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M25','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M25">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M26','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M26">View MathML</a>[26]
9 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M27','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M27">View MathML</a> k8·preRes1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M28','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M28">View MathML</a>
10 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M29','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M29">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M30','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M30">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M31','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M31">View MathML</a>[26], <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M32','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M32">View MathML</a>[50]
11 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M33','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M33">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M34','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M34">View MathML</a> <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M35','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M35">View MathML</a>[26]
12 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M36','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M36">View MathML</a> k11·AHL1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M37','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M37">View MathML</a>[19]
13 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M38','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M38">View MathML</a> k12·AHL2 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M39','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M39">View MathML</a>[19]
14 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M40','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M40">View MathML</a> k13·AHL1:AHLR1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M41','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M41">View MathML</a>[26]
15 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M42','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M42">View MathML</a> k14·AHL2:AHLR2 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M43','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M43">View MathML</a>[26]
16 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M44','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M44">View MathML</a> k15·Res1 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M45','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M45">View MathML</a>[20]
17 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M46','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M46">View MathML</a> k16·Res2 <a onClick="popup('http://www.biomedcentral.com/1752-0509/6/58/mathml/M47','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1752-0509/6/58/mathml/M47">View MathML</a>[20]

Biliouris et al.

Biliouris et al. BMC Systems Biology 2012 6:58   doi:10.1186/1752-0509-6-58

Open Data