Table 1

Statistics for the four sets of mRNA expression data used in our analyses
Form of stress # of transcripts # of genes in the model # of genes up/down regulated # of affected reactions % of total active reactions
Temperature change, 259 80 68 65 13
strain 201
Temperature change, 507 207 138 202 41
strain KIM5
Streptomycin 345 131 110 153 31
Chloramphenicol 738 207 183 267 54

The number of up/down regulated genes in the GX-FBA simulations differs from the number of genes present in the model because of the imposed selection criterion (see Methods).

Navid and Almaas

Navid and Almaas BMC Systems Biology 2012 6:150   doi:10.1186/1752-0509-6-150

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