Table 2

Performance of the semantic similarity networks in the validation experiments. Candidate genes are selected from the semantic similarity networks.

Resnik (%)

Schlicker (%)

Lin (%)

Wang (%)


Linkage interval

MRR

10.41

10.70

10.84

10.95

AUC

90.50

90.20

90.06

89.95

Random genes

MRR

10.19

10.48

10.62

10.79

AUC

90.72

90.42

90.68

90.11

Random genes (999)

MRR

10.14

10.49

10.60

10.81

AUC

90.36

90.01

89.91

89.69

Genome-wide scan

MRR

10.16

10.49

10.60

10.81

AUC

90.10

89.77

89.66

89.45


Jiang et al. BMC Systems Biology 2011 5(Suppl 2):S2   doi:10.1186/1752-0509-5-S2-S2

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