Table 2

TP, FP, FN and TN values for the mapped TFs in the target genome

TFbl

TFf

TFsf


Number of mapped links

1344

903

212

Number of mapped TFs

767

434

118

True Positives (TP)

400

328

91

False Positives (FP)

367

106

27

True Negatives (TN)

33062

33323

33402

False Negatives (FN)

1522

1594

1831


Comparison of the three result sets of predicted transcription factors (TFs) identified for the A. thaliana genome based on binary classifier. TFf result set is analysed as the preferred set for transcription factor mapping. E-value threshold used for BLAST is 1e-1.

Sharma et al. BMC Systems Biology 2011 5(Suppl 1):S4   doi:10.1186/1752-0509-5-S1-S4

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