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Open Access Highly Accessed Methodology article

Rule-based multi-level modeling of cell biological systems

Carsten Maus*, Stefan Rybacki and Adelinde M Uhrmacher

Author Affiliations

University of Rostock, Institute of Computer Science, Albert-Einstein-Str. 22, 18059 Rostock, Germany

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BMC Systems Biology 2011, 5:166  doi:10.1186/1752-0509-5-166

Published: 17 October 2011

Additional files

Additional file 1:

ML-Rules demo program The ZIP file comprises a prototype tool of ML-Rules including a model editor, the simulator, and a rudimentary line chart visualization of simulation trajectories. Also a user manual and several example models are part of the tool package. To start the demo tool, please unzip the file and execute the run.jar file. Java Runtime Environment (Version 6 or higher) is required for execution.

Format: ZIP Size: 5.7MB Download file

Open Data

Additional file 2:

Example models The PDF file contains descriptions of the entire example models including initial solutions and parameter values that have been used for the simulation studies.

Format: PDF Size: 560KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data