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Open Access Highly Accessed Research article

Critical assessment of human metabolic pathway databases: a stepping stone for future integration

Miranda D Stobbe, Sander M Houten, Gerbert A Jansen, Antoine HC van Kampen and Perry D Moerland*

BMC Systems Biology 2011, 5:165  doi:10.1186/1752-0509-5-165

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Consensus and conflict cards for metabolic pathway databases

Perry Moerland   (2013-06-27 12:13)  Academic Medical Center

As a follow-up of the comparison that we describe in this paper, we recently published a paper on Consensus and Conflict Cards (C2Cards) that provide concise overviews of what metabolic pathway databases do or do not agree on. Each card is centered at a single gene, EC number or reaction. As a proof-of-concept, we implemented C2CardsHuman, as a web application http://www.molgenis.org/c2cards, covering five human pathway databases.

Consensus and conflict cards for metabolic pathway databases
Miranda D Stobbe, Morris A Swertz, Ines Thiele, Trebor Rengaw, Antoine HC van Kampen and Perry D Moerland
BMC Systems Biology 2013, 7:50

Competing interests

I am an author of this paper and the C2Cards paper.

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