Table 2

Gene Ontology Enrichment of Transcripts Following Bifurcation

Branch of Down-regulated Transcripts

Branch of Up-regulated Transcripts


Case

Bifurcation Controlling TFs

Process Gene Ontology Terms

p-value

Bifurcation Controlling TFs

Process Gene Ontology Terms

p-value


Carbon Catabolite Repression

Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p

ion trans-membrane transporter activity

5.3 × 10-5

Mth1p, Msn2p, Msn4p, Hap2p, Swi4p, Ume6p

Endoplasmic reticulum membrane

4.7 × 10-5


G1-specific transcription in mitotic cell cycle

5.0 × 10-3

Microtubule associated complex

2.8 × 10-3


aerobic respiration

8.4 × 10-5

tRNA modification

1.0 × 10-3


retrograde transport

8.1 × 10-3

Proteasome complex

1.3 × 10-3


Nitrogen Catabolite Repression

Hms1p, Mga1p, Msn1p, Phd1p, Hap2p

ion trans-membrane transport

5.9 × 10-3

Gcr2p

ribosome biogenesis and assembly

2.9 × 10-3


Dikicioglu et al. BMC Systems Biology 2011 5:148   doi:10.1186/1752-0509-5-148

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