Table 1

Gene Ontology (GO) Annotations to Differentially Expressed Genes

Significantly Associated Process GO Term

p-value

Fraction of Differentially Expressed Subset Associated with the GO Term

Fraction of Transcriptome Associated with the GO Term


Carbon Catabolite Repression


Carboxylic metabolic processes

4.07 × 10-21

74/372

344/6353


Aspartate family amino acid metabolic processes

1.09 × 10-6

17/372

48/6353


Glutamine family amino acid metabolic processes

2.35 × 10-4

11/372

27/6353


Methionine family amino acid metabolic processes

1.69 × 10-3

10/372

26/6353


Serine family amino acid metabolic processes

9.85 × 10-3

13/372

37/6353


Purine metabolic processes

2.37 × 10-9

17/372

35/6353


Glycolysis

4.20 × 10-8

13/372

22/6353


Oxidative phosphorylation

4.79 × 10-8

18/372

46/6353


Alcohol catabolic processes

1.19 × 10-7

19/372

54/6353


Energy coupled proton transport

3.81 × 10-7

11/372

17/6353


Nitrogen Catabolite Repression


glycolysis

3.95 × 10-16

15/369

22/6353


gluconeogenesis

5.85 × 10-6

9/369

15/6353


Proton transport

8.02 × 10-6

11/369

21/6353


Oxidative phosphorylation

2.98 × 10-4

14/369

46/6353


Aspartate family amino acid metabolic process

5.38 × 10-4

14/369

48/6353


Amino acid and derivative metabolic process

4.19 × 10-3

36/369

273/6353


Dikicioglu et al. BMC Systems Biology 2011 5:148   doi:10.1186/1752-0509-5-148

Open Data