Additional file 6.

List of all the proteins with MIPS functions newly assigned by our method (Table S2). List of all the proteins with MIPS functions newly assigned by our method (bright yellow), along with the ones from the MIPS database (sky blue) which is used as "input function." HC outcomes are selected as in Additional file 5, Table S1. Sometimes the functions already annotated in MIPS and the ones assigned by our method are quite similar, and very different in some cases. Therefore, we suggest the latter case be worth investigating further, as we did in the main text.

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Lee et al. BMC Systems Biology 2011 5:126   doi:10.1186/1752-0509-5-126