Additional file 2.
iRsp1095 Metabolic Reconstruction Additional File 2 contains 12 tables. Table S1 list all the reactions in iRsp1095 including official reaction names, reaction stoichiometry, GPR assignments, directionality assignments and localization information. Table S2 contains information about metabolites in the model. Table S3 contains thermodynamic calculations used in the determined reaction directionality. Table S4 lists reactions constrained to eliminate SBCs. Table S5 lists the genes present in the model. Table S6 summarizes simulated growth phenotypes with various carbon sources. Table S7 lists all the references used in curation of iRsp1095. Table S8 lists reactions added to the model based on metaSHARK analysis. Table S9 details the compositions of SIS minimal media. Table S10 lists essential genes identified by FBA analysis. Table S11 list the gap filling reactions added to iRsp1095. Table S12 contains as description of the confidence scores assigned to the reactions in iRsp1095.
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Imam et al. BMC Systems Biology 2011 5:116 doi:10.1186/1752-0509-5-116