Selected articles from the Third International Symposium on Optimization and Systems Biology

Meeting report  

Optimization meets systems biology

Yong Wang, Xiang-Sun Zhang, Luonan Chen BMC Systems Biology 2010, 4(Suppl 2):S1 (13 September 2010)

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Proceedings  

Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana

Gyan Srivastava, Ping Li, Jingdong Liu, Dong Xu BMC Systems Biology 2010, 4(Suppl 2):S2 (13 September 2010)

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Proceedings  

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern

Binhua Tang, Xuechen Wu, Ge Tan, Su-Shing Chen, Qing Jing, Bairong Shen BMC Systems Biology 2010, 4(Suppl 2):S3 (13 September 2010)

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Proceedings  

Discovering conditional co-regulated protein complexes by integrating diverse data sources

Fei Luo, Juan Liu, Jinyan Li BMC Systems Biology 2010, 4(Suppl 2):S4 (13 September 2010)

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Proceedings  

Shrunken methodology to genome-wide SNPs selection and construction of SNPs networks

Yang Liu, Michael Ng BMC Systems Biology 2010, 4(Suppl 2):S5 (13 September 2010)

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Proceedings  

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces

Zheng Xia, Ling-Yun Wu, Xiaobo Zhou, Stephen TC Wong BMC Systems Biology 2010, 4(Suppl 2):S6 (13 September 2010)

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Proceedings  

A systems biology approach to identify effective cocktail drugs

Zikai Wu, Xing-Ming Zhao, Luonan Chen BMC Systems Biology 2010, 4(Suppl 2):S7 (13 September 2010)

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Proceedings  

Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs

Hao-Teng Chang, Louis J Tseng, Ta-Jen Hung, Blacky T Kao, Wei-Yong Lin, Tan-chi Fan, Margaret Chang, Tun-Wen Pai BMC Systems Biology 2010, 4(Suppl 2):S8 (13 September 2010)

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Proceedings  

Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions

Masahiko Nakatsui, Katsuhisa Horimoto, Masahiro Okamoto, Yasuhito Tokumoto, Jun Miyake BMC Systems Biology 2010, 4(Suppl 2):S9 (13 September 2010)

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Proceedings  

Determining modular organization of protein interaction networks by maximizing modularity density

Shihua Zhang, Xue-Mei Ning, Chris Ding, Xiang-Sun Zhang BMC Systems Biology 2010, 4(Suppl 2):S10 (13 September 2010)

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Proceedings  

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains

Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen BMC Systems Biology 2010, 4(Suppl 2):S11 (13 September 2010)

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Proceedings  

FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures

Chenglei Sun, Xing-Ming Zhao, Weihua Tang, Luonan Chen BMC Systems Biology 2010, 4(Suppl 2):S12 (13 September 2010)

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Proceedings  

Comparing biological networks via graph compression

Morihiro Hayashida, Tatsuya Akutsu BMC Systems Biology 2010, 4(Suppl 2):S13 (13 September 2010)

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Proceedings  

On finite-horizon control of genetic regulatory networks with multiple hard-constraints

Cong Yang, Ching Wai-Ki, Tsing Nam-Kiu, Leung Ho-Yin BMC Systems Biology 2010, 4(Suppl 2):S14 (13 September 2010)

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