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OptFlux: an open-source software platform for in silico metabolic engineering

Isabel Rocha*, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P Pinto, Jens Nielsen, Kiran R Patil, Eugénio C Ferreira and Miguel Rocha

BMC Systems Biology 2010, 4:45 doi:10.1186/1752-0509-4-45

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New multilevel network layout algorithms allow researchers to create biologically relevant and visually pleasing network graphs for large datasets within a multi optimization framework.

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FAME, the Flux Analysis and Modeling Environment

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Systems biology of lactic acid bacteria: a critical review

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