Table 6

GO term enrichments for all LCRs.

Frequencies

Genes

Background

p-value

q-value

GO term ID

definition


49

147

3.89 × 10-06

0.003

(P)GO:0006950

response to stress

117

518

4.40 × 10-05

0.017

(P)GO:0006350

transcription

41

133

1.03 × 10-04

0.026

(P)GO:0006468

protein amino acid phosphorylation

11

15

2.22 × 10-04

0.042

(P)GO:0006414

translational elongation

105

490

6.08 × 10-04

0.092

(P)GO:0006355

regulation of transcription, DNA-dependent


73

294

1.25 × 10-04

0.054

(F)GO:0003676

nucleic acid binding


51

189

2.59 × 10-04

0.066

(C)GO:0005730

nucleolus

30

93

4.58 × 10-04

0.066

(C)GO:0009277

fungal-type cell wall

344

1946

6.27 × 10-04

0.066

(C)GO:0005634

nucleus

22

63

0.001

0.088

(C)GO:0005934

cellular bud tip


GO term enrichments from proteins with LCRs compared to the entire S. cerevisiae proteome. Frequencies represent the number of proteins annotated by a given term, p-values are calculated using Fisher's exact test, q-values are calculated using Benjamini & Hochberg's FDR method.

Coletta et al. BMC Systems Biology 2010 4:43   doi:10.1186/1752-0509-4-43

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