Meredys, a multi-compartment reaction-diffusion simulator using multistate realistic molecular complexes
Computational Neurobiology Group, EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
BMC Systems Biology 2010, 4:24 doi:10.1186/1752-0509-4-24Published: 16 March 2010
Additional file 1:
Example model NeuroML input files. NeuroML input files describing the example model used in the text.
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Additional file 2:
Movie of Meredys running. Short movie of a simulation run using Meredys.
Format: TGZ Size: 57KB Download file
Sourcecode of Meredys. Archive containing the source of the software, a java library, the software to generate a trace from simulation results, the manual, two full models, and a set of tutorials.
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Additional file 4:
Comparison of Meredys and continuous approaches. Comparison of simulations of zero order, uni- and bimolecular reactions run in Meredys or obtained using ordinary differential equations.
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