Table 9 |
|||||||
|
GO-based annotation of residual MCODE modules |
|||||||
|
n |
n.ex |
ex.mean |
cor.mean |
mf.mean |
bp.mean |
cc.mean |
|
|
|
|||||||
|
Int-1 |
14 |
13 |
7.37 |
0.1 |
0.49 |
0.44 |
0.5 |
|
Int-2 |
9 |
7 |
7.83 |
-0.02 |
0.27 |
0.24 |
0.52 |
|
Int-3 |
13 |
9 |
8.66 |
0.33 |
0.47 |
0.41 |
0.66 |
|
Int-4 |
13 |
12 |
8.29 |
0.06 |
0.4 |
0.44 |
0.58 |
|
Int-6 |
75 |
68 |
8.46 |
0.2 |
0.24 |
0.18 |
0.4 |
|
Int-7 |
58 |
43 |
8.3 |
0.19 |
0.26 |
0.16 |
0.38 |
|
Int-8 |
47 |
39 |
9.1 |
0.23 |
0.25 |
0.17 |
0.44 |
|
Int-9 |
74 |
70 |
9.44 |
0.28 |
0.27 |
0.24 |
0.43 |
|
Int-10 |
10 |
6 |
10.28 |
0.77 |
0.65 |
0.43 |
0.77 |
|
Int-11 |
29 |
27 |
9.12 |
0.4 |
0.36 |
0.33 |
0.63 |
|
Int-12 |
32 |
28 |
8.72 |
0.35 |
0.31 |
0.41 |
0.61 |
|
Int-13 |
79 |
46 |
9.99 |
0.49 |
0.36 |
0.31 |
0.48 |
|
Int-14 |
29 |
12 |
9.77 |
0.23 |
0.37 |
0.44 |
0.43 |
|
|
|||||||
|
Lit-1 |
5 |
5 |
7.87 |
0.02 |
0.53 |
0.06 |
0.46 |
|
Lit-2 |
7 |
7 |
8.47 |
-0.01 |
0.44 |
0.32 |
0.74 |
|
Lit-3 |
145 |
139 |
8.42 |
0.06 |
0.25 |
0.15 |
0.35 |
|
Lit-5 |
5 |
2 |
8.69 |
0.16 |
0.3 |
0.16 |
0.61 |
|
Lit-6 |
144 |
140 |
8.69 |
0.1 |
0.26 |
0.19 |
0.41 |
|
Lit-7 |
21 |
21 |
7.98 |
0.05 |
0.33 |
0.19 |
0.39 |
|
Lit-8 |
98 |
96 |
8.72 |
0.16 |
0.24 |
0.24 |
0.41 |
|
Lit-9 |
15 |
15 |
8.67 |
0.15 |
0.26 |
0.2 |
0.45 |
|
Lit-10 |
128 |
122 |
8.62 |
0.21 |
0.28 |
0.16 |
0.42 |
|
Lit-12 |
40 |
39 |
8.79 |
0.23 |
0.29 |
0.28 |
0.51 |
|
|
|||||||
|
Ortho-1 |
6 |
3 |
11.12 |
0.67 |
0.32 |
0.37 |
0.39 |
|
Ortho-3 |
12 |
8 |
8.65 |
0.32 |
0.45 |
0.37 |
0.66 |
|
Ortho-6 |
13 |
6 |
8.38 |
0.24 |
0.28 |
0.2 |
0.53 |
|
Ortho-7 |
10 |
10 |
9.16 |
0.12 |
0.44 |
0.21 |
0.68 |
|
Ortho-8 |
23 |
20 |
10.08 |
0.51 |
0.35 |
0.33 |
0.56 |
|
Ortho-9 |
10 |
6 |
10.28 |
0.77 |
0.65 |
0.43 |
0.77 |
|
Ortho-11 |
44 |
31 |
10.58 |
0.53 |
0.35 |
0.43 |
0.48 |
|
Ortho-12 |
35 |
15 |
8.81 |
0.45 |
0.44 |
0.28 |
0.64 |
|
Ortho-13 |
35 |
15 |
8.81 |
0.45 |
0.44 |
0.28 |
0.64 |
|
Ortho-14 |
29 |
12 |
9.77 |
0.23 |
0.37 |
0.44 |
0.43 |
|
|
|||||||
|
HTP-1 |
67 |
56 |
8.74 |
0.12 |
0.3 |
0.16 |
0.41 |
|
HTP-2 |
17 |
15 |
9.23 |
0.17 |
0.45 |
0.16 |
0.44 |
|
HTP-3 |
20 |
18 |
9.06 |
0.08 |
0.45 |
0.28 |
0.5 |
|
HTP-4 |
17 |
15 |
8.83 |
0.14 |
0.38 |
0.16 |
0.37 |
|
|
|||||||
|
GO-based annotation results for MCODE modules. Values in bold font are above the 0.5 threshold. The listed groups have not passed at least the two required GO thresholds, and thus received a low score. |
|||||||
|
Marras et al. BMC Systems Biology 2010 4:102 doi:10.1186/1752-0509-4-102 |
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