Table 3

GO-based annotation results of CFinder and MCODE modules

module ID

n

n.ex

ex.mean

cor.mean

mf.mean

bp.mean

cc.mean


High

Int-2

5

5

8.33

0.22

0.76

0.7

0.7

Int-3

5

1

8.54

NA

0.85

0.88

0.84

Int-4

9

7

9.56

0.43

0.7

0.81

0.92

Int-7

17

13

8.88

0.17

0.63

0.58

0.66

Lit-2

5

5

8.33

0.22

0.76

0.7

0.7

Lit-5

9

9

9.62

0.42

0.59

0.68

0.66

Lit-9

8

8

9.02

0.62

0.85

0.92

0.82

Lit-11

10

9

8.17

0.3

0.58

0.74

0.61

Ortho-8

15

11

8.9

0.15

0.68

0.57

0.67

Ortho-12

10

9

10.73

0.59

0.83

1

0.98


Medium

Int-18

18

16

9.55

0.54

0.45

0.51

0.7

Ortho-18

17

15

9.65

0.58

0.49

0.6

0.72


Low

Int-13

13

11

8.79

0.39

0.45

0.73

0.96

Lit-4

16

11

7.95

0.24

0.28

0.52

0.58

Lit-14

11

10

8.79

0.39

0.4

0.72

0.95

Ortho-7

8

7

9.48

0.41

0.48

0.56

0.61


MCODE

module ID

n

n.ex

ex.mean

cor.mean

mf.mean

bp.mean

cc.mean


High

Int-5

9

7

9.56

0.43

0.7

0.81

0.92

Lit-4

7

7

8.99

0.13

0.89

0.79

0.71

Ortho-4

12

9

9.37

0.31

0.51

0.59

0.54

Ortho-5

9

7

12.92

0.77

0.65

0.78

0.71


Low

Lit-11

9

8

8.34

0.24

0.4

0.59

0.69

Lit-13

22

20

8.81

0.32

0.33

0.5

0.63

Ortho-2

6

5

8.08

0.29

0.41

0.78

0.73

Ortho-10

11

9

8.38

0.38

0.39

0.52

0.67


GO-based annotation results of CFinder andMCODE modules: High (bold font for every GO category), Medium (cor.mean ≧ 0.5), and Low (cor.mean < 0.5) confidence groups.

Marras et al. BMC Systems Biology 2010 4:102   doi:10.1186/1752-0509-4-102

Open Data