Research article
Inferring modules from human protein interactome classes
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* Corresponding author: Enrico Capobianco ecapob@crs4.it
1 CRS4 Bioinformatics Laboratory - Technology Park of Sardinia, Pula (Cagliari), Sardinia - Italy
2 Institute for Theoretical Biology - Humboldt University - Berlin, Germany
3 Max-Delbrück Center for Molecular Medicine - Berlin, Germany
4 Centre of Molecular and Structural Biomedicine - Universidade do Algarve - Faro, Portugal
BMC Systems Biology 2010, 4:102 doi:10.1186/1752-0509-4-102
Published: 23 July 2010Additional files
Additional file 1:
GOpvalues. Semi-quantitative evaluation of GO-annotated modules with p-values.
Format: DOC Size: 67KB Download file
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Additional file 2:
tableGOp-valuecomplete. Complete list of GO-annotated modules.
Format: DOC Size: 172KB Download file
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Additional file 3:
overlapscores. Overlap scores computed for MCODE and CFinder modules.
Format: DOC Size: 108KB Download file
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Additional file 4:
tablePathways. Pathway annotation and evaluation for MCODE and CFinder modules.
Format: DOC Size: 81KB Download file
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Additional file 5:
TablesModulewisePvsR. P vs R scores computed for MOCDE and CFinder modules.
Format: DOC Size: 119KB Download file
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Additional file 6:
TablesProteinwisePvsR. P vs R scores computed for MOCDE and CFinder modules (disaggregated by interactome class).
Format: DOC Size: 78KB Download file
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Additional file 7:
MCODEresults. It contains four files: MCODE2coresHTP.txt, MCODE2coresINT.txt, MCODE2coresLIT.txt, MCODE2coresORTHO.txt that report core structure and parameters.
Format: ZIP Size: 22KB Download file
Additional file 8:
CFinder-results. It contains the complete set of communities retrieved by CFinder from the various interactome classes.
Format: ZIP Size: 82KB Download file
Additional file 10:
annotation-description. Notes on the computed p-values.
Format: DOC Size: 45KB Download file
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Additional file 11:
walktrap-results. It contains the complete set of communities retrieved by Walktrap from the various interactome classes.
Format: ZIP Size: 76KB Download file