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Open Access Highly Accessed Research article

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

Monica L Mo1, Bernhard Ø Palsson1 and Markus J Herrgård12*

Author Affiliations

1 Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA

2 Current address: Synthetic Genomics, Inc, 11149 N Torrey Pines Rd, La Jolla, CA 92037, USA

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BMC Systems Biology 2009, 3:37  doi:10.1186/1752-0509-3-37

Published: 25 March 2009

Additional files

Additional file 1:

iMM904 network content. The data provided represent the content description of the iMM904 metabolic network and detailed information on the expanded content.

Format: XLS Size: 2.7MB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

iMM904 model files. The data provided are the model text files of the iMM904 metabolic network that is compatible with the available COBRA Toolbox [13]. The model structure can be loaded into Matlab using the 'SimPhenyPlus' format with GPR and compound information.

Format: ZIP Size: 163KB Download file

Open Data

Additional file 3:

Supplemental figures. The file provides the supplemental figures and descriptions of S1, S2, S3, and S4.

Format: PDF Size: 513KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Gdh mutant aerobic and anaerobic analysis results. The data provided are the full results for the exometabolomic analysis of aerobic and anerobic gdh1/GDH2 mutant.

Format: XLS Size: 669KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data