Genome-scale constraint-based modeling of Geobacter metallireducens

doi:10.1186/1752-0509-3-15

BMC Systems Biology

Volume 3

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Sun J
Sayyar B
Butler JE
Pharkya P
Fahland TR
Famili I
Schilling CH
Lovley DR
Mahadevan R

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Sayyar B
Butler JE
Pharkya P
Fahland TR
Famili I
Schilling CH
Lovley DR
Mahadevan R
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Research article

Genome-scale constraint-based modeling of Geobacter metallireducens

Jun Sun¹ , Bahareh Sayyar² , Jessica E Butler³ , Priti Pharkya¹ , Tom R Fahland¹ , Iman Famili¹ , Christophe H Schilling¹ , Derek R Lovley³ and Radhakrishnan Mahadevan²

¹Genomatica Inc., 10520 Wateridge Circle, San Diego, CA, USA

²Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario, Canada

³Department of Microbiology, University of Massachusetts, Amherst, MA, USA

author email corresponding author email

BMC Systems Biology 2009, 3:15doi:10.1186/1752-0509-3-15


Published:	28 January 2009

Additional files

Additional file 1:

Non-gene associated reactions in the G. metallireducens model. This table provides the detailed information for the non-gene associated reactions in the G. metallireducens model, including justification for the inclusion of each non-gene associated reaction in the model.

Format: XLS Size: 20KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

All the reactions, genes, and metabolites in the G. metallireducens model. The data provide comprehensive lists of genes, reactions, metabolites, and GPR associations in the G. metallireducens metabolic model.

Format: XLS Size: 239KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

All the reactions, genes, and metabolites in the G. sulfurreducens model. The data provide comprehensive lists of genes, reactions, metabolites, and GPR associations in the G. sulfurreducens metabolic model.

Format: XLS Size: 220KB Download file

This file can be viewed with: Microsoft Excel Viewer