Table 2

Carbon sources enabling growth of iJN746 in iM9 mineral medium.

Class

Compound

Class

Compound


Aromatic and related compounds

Amino acids



Protocatechuate

L-Arginine

Caffeate

L-Aspartate

Oxoadipate

L-Glutamate

4-Hydroxybenzoate

L-Glycine

Benzoate

L-Histidine

Catechol

L-Isoleucine

Coniferyl alcohol

L-Leucine

Ferulate

L-Lysine

Gallate

L-Proline

m-Xylene

L-Serine

Nicotinate

L-Threonine

p-Xylene

L-Valine

Phenylacetate

Organics acids


L-Phenylalanine

α-Ketoglutarate

Quinate

Citrate

p-Coumarate

Fumarate

Toluene

Isocitrate

L-Tyrosine

D-Lactate

Vanillin

L-Lactate

Vanillate

Malate

Fatty acids

Succinate


Acetate

Carbohydrates


Decanoate

2-ketogluconate

Dodecanoate

D-Fructose

Hexadecanoate

D-Glucose

Hexanoate

D-Gluconate

Octanoate

D-Ribose

Propionate

Miscellaneous compounds


Tetradecanoate

4-Aminobuturate

Polyalcohols and glycols

Glycine betaine


Glyceraldehyde

Ornithine

Glycerol

Choline

Glycolate

Choline sulfate


Carbon sources enabling growth of iJN746 in iM9 mineral medium. The compounds were grouped based their structural characteristics. A complete list of carbon sources tested, along with possible nitrogen and sulfur sources, as well as bibliographic support can be found in the Additional file 2.

Nogales et al. BMC Systems Biology 2008 2:79   doi:10.1186/1752-0509-2-79

Open Data