BMC Systems Biology
Volume 2

Viewing options:

Associated material:

Related literature:

Tools:

Post to:

Research article

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

David J Weston¹ , Lee E Gunter¹ , Alistair Rogers²^,3 and Stan D Wullschleger¹

¹Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6422, USA

²Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA

³Department of Crop Sciences, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA

author email corresponding author email

BMC Systems Biology 2008, 2:16doi:10.1186/1752-0509-2-16


Published:	4 February 2008

Additional file 1:

Supplementary Table 1; Gene network coexpression gene input list.

Format: XLS Size: 19MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

Supplementary Table 2; Module gene enrichment of differentially expressed genes.

Format: XLS Size: 49KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Supplementary Table 3; Results for the weighted gene coexpression network analysis.

Format: XLS Size: 1.1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 4:

Supplementary Table 4; Signature intersect gene annotation and network properties.

Format: XLS Size: 118KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 5:

Supplementary Figure 1; Similarity score comparison of individual replicates of the combined heat and drought treatment.

Format: PDF Size: 55KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 6:

Supplementary Figure 2; Microarray hybridization design schematic.

Format: PDF Size: 40KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 7:

R scripts used to construct the weighted gene coexpression network.

Format: DOC Size: 34KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional file 8:

The reference genomic signatures lists.

Format: ZIP Size: 2.7MB Download file