Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

doi:10.1186/1752-0509-2-16

BMC Systems Biology

Volume 2

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Research article

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

David J Weston¹ , Lee E Gunter¹ , Alistair Rogers²^,3 and Stan D Wullschleger¹

¹Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831-6422, USA

²Environmental Sciences Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA

³Department of Crop Sciences, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA

author email corresponding author email

BMC Systems Biology 2008, 2:16doi:10.1186/1752-0509-2-16


Published:	4 February 2008

Additional files

Additional file 1:

Supplementary Table 1; Gene network coexpression gene input list.

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Additional file 2:

Supplementary Table 2; Module gene enrichment of differentially expressed genes.

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Additional file 3:

Supplementary Table 3; Results for the weighted gene coexpression network analysis.

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Additional file 4:

Supplementary Table 4; Signature intersect gene annotation and network properties.

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Additional file 5:

Supplementary Figure 1; Similarity score comparison of individual replicates of the combined heat and drought treatment.

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Additional file 6:

Supplementary Figure 2; Microarray hybridization design schematic.

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Additional file 7:

R scripts used to construct the weighted gene coexpression network.

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Additional file 8:

The reference genomic signatures lists.

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