Performance of different module finding algorithmson S. cerevisiae osmotic shock data. (a) The fraction of the modules for which at least one category was enriched, (b) The fraction of the categories enriched in at least one module. Enrichment was defined as attaining hypergeometric p-value ≤ 10-3. Annotation sets: GO-Process: Level 7 of the GO "biological process" ontology; GO-Complex: subterms of "protein complex" term, GO:0043234; MIPS Phenotypes: MIPS deletion phenotype annotations; KEGG Pathways: KEGG molecular pathway participation.
Ulitsky and Shamir BMC Systems Biology 2007 1:8 doi:10.1186/1752-0509-1-8