Table 1

Genotypes of MAP isolates in this study and their origins
Genotyping method
Isolate No. Genotype No. No. of MIRU repeats (Product size) Short sequence repeats (Number) IS1311/REA type Herd code DISTRICT
MIRU 2 MIRU 3 VNTR 32 Locus 1 Locus 2 Locus 8
MapUg1 1 9(350) 1(198) - - 12 G GGTtgtGGT B 020 Wakiso
MapUg2 2 15(520) 1(198) - - 11 G GGTtgtGGT X 058 Luwero
MapUg3 3 - - - - 11 G GGTtgtGGT B 013 Wakiso
MapUg4 4 9(350) 5(300) 9(300) - 11 G GGTtgtGGT X 018 Wakiso
MapUg5 5 9(350) 5(300) 9(300) - 10 G GGTcgtcgt C 022 Wakiso
MapUg6_ 6 15(520) 5(300) 9(300) 6 G 10 G GGTtgtGGT C 023 Wakiso
MapUg7 7 7(300) 5(300) 9(300) 7 G 10 G 4GGT C 030 Wakiso
MapUg8 8 15(520) 5(300) 9(300) 7 G 11 G GGTtgtGGT C 044 Luwero
MapUg9 8 15(520) 5(300) 9(300) 7 G 11 G GGTtgtGGT C 038 Mpigi
MapUg10* 9 15(520) 5(300) 9(300) - 11 G GGTtgtGGT C 033 Mpigi
MapUg11 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C 048 Masindi
MapUg12 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg13 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg14 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg15 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg16 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg17 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg18 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg19 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg20 10 9(350) 5(300) 9(300) 6 G 10 G 4GGT C Abattoir Kampala
MapUg21 11 9(350) 5(300) 9(300) 6 G 10 G 2GGT C Abattoir Kampala

Genotype profiles of the 21 isolates. Note that isolates whose MIRUs, VNTR 32, SSR loci 1, 2 could not be amplified had distinct genotype profiles. These isolates were confirmed to belong to different genotypes using the SSR locus 8 phyologenetic analysis.

* MapUg10 belonged to a different genotype according to SSR locus 8 SNP phylogenetic analysis.

Okuni et al.

Okuni et al. BMC Veterinary Research 2012 8:99   doi:10.1186/1746-6148-8-99

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