Table 8

Additional SNPs identified using the no-call-only filter.

SNP

Disease(s)

Characterized genes in duplicons


rs10238378

BD

-

rs10485575

BD

SNX5, ANO4

rs10768666

RA

HCCA2, KRTAP5-8, KRTAP5-3, [KRTAP5-2], [KRTAP5-1], [KRTAP5-5], [KRTAP5-9], [KRTAP5-10],

rs10811497

BD

IFNA4, IFNA7, IFNA10, IFNA14, IFNA16, IFNA17, IFNA21, [IFNW1]

rs10896468

BD, CD, T2D

OR8U8, OR5M8, [OR5M3], [OR5M9]

rs11228904

BD, HT, T1D

TRIM48, TRIM53

rs11583656

HT

MYPT2, [UBE2T]

rs1191684

BD

[PAX8]

rs12428824

BD

ENPP3, CTAGE4, CTAGE6, [OR2A7], [OR2A20P], [OR2A4]

rs1421867

T1D

-

rs1708080l

BD, HT

PARP4, TPTE2

rs17310770

T2D

ROPN1, ROPN1B, CCDC14

rs17423694

HT

[NBPF11]

rs17636964

BD, RA, T2D

IPMK

rs1809667

T1D

HCCA2, KRTAP5-2, KRTAP5-8, KRTAP5-3, KRTAP5-10, KRTAP5-11, KRTAP5-7, [KRTAP5-1], [DUSP8], [KRTAP5-5], [KRTAP5-9]

rs1819829

HT

CES7, [CES1]

rs1820450

RA

GPC5, [GOLGA8B]

rs1868584

BD

ROCK2, CGGBP1, [ZNF654]

rs193017l

T1D

PCDH15

rs2039945

T2D

-

rs2804672

HT

HSD17B7, HSD17B7P2, CDC10L

rs3864439

BD

DPY19L2, DPY19L2P1, DPY19L2P4, [DPY19L1], [STEAP1]

rs4236384

RA

SLC29A4, TNRC18

rs4318932

T2D

TYW1, TYW1B, [STAG3L4]

rs4471699

BD, T2D

SULT1A3, GIYD2, BOLA2, IMAA, CORO1A, MLAS, SMG1, [UQCRC2], [NPIPL3]

rs4532803

CAD

ELA3A, ELA3B, [HSPC157]

rs4545817

HT

ALG1, FAM86A, [COL6A4P2]

rs584630

BD

ZNF33A, ZNF33B, ZNF37A, ZNF37B, [ZNF25]

rs649483l

RA

FMN1

rs6510085

RA

ZNF419, ZNF773, [ZNF772], [ZNF549]

rs651263l

CAD

-

rs731999l

BD, CAD, HT, T1D, T2D

CENPI

rs8182488

T1D

ZNF765, ZNF761, [ZNF813]

rs9948005

BD

FAM38B

rs9976299

RA

ITGB2

SNP_A-1817967

CAD, CD

-

SNP_A-1858955

CD, BD

GUSBL1, GUSBL2, SMA4, GUSBP1, [RGL4]


Genes in square brackets are outside the duplicons, but a duplicon is at most 30 kb upstream of the gene.

Ross BMC Medicine 2011 9:12   doi:10.1186/1741-7015-9-12

Open Data