Table 4

SNPs identified in the MHC region for T1D using the stringent filter.

Cohort(s)

SNP/identity

(degeneracy)

Chr: Pos. (hg17)

and orientation

Duplicon

length

Characterized genes and

pseudogenes in duplicons


T1D

rs9378249

6:

31.4 M→

27 kb

HLA-B, DHFRP2

92.9% (F)

6:

31.3 M→

35 kb

HLA-C

T1D

rs9257223

6:

29 M→

16 kb

-

92.5%

11:

50 M→

16 kb

-

T1D

rs389600

6:

30 M→

4 kb

HLA-K

87.5%

6:

30 M←

4 kb

HLA-A

87.5%

6:

30 M←

4 kb

HLA-H

86.2%

6:

30 M←

4 kb

HLA-J

85.8%

6:

30 M←

3.5 kb

HLA-G


Ross BMC Medicine 2011 9:12   doi:10.1186/1741-7015-9-12

Open Data