Table 1

Multiplex tags and read count for sampled accession.

Accession

Multiplex Tag

Number of Reads

Read Length

(bp, without tag)

Median coverage


Abies firma

AGCT

3110857

36

116

Cedrus deodara

CCCT

1338443

36

74

Larix occidentalis

GGT

719060

33

30

Picea sitchensis

ATT/AATT

1268688/710117

33/37

80

Pinus albicaulis

AGCT

869509

36

54

P. aristata

ACGT

1884108

36

100

P. armandii

AGCT

1233280

36

109

P. attenuata

ACGT

1230397

36

64

P. ayacahuite

CCCT

1173420

36

96

P. banksiana

AGCT

2307302

36

65

P. canariensis

CCCT

1069293

36

95

P. cembra

CTGT

1166707

36

40

P. contorta

CCT

1423631/423905

33/37

65

P. chihuahuana

CTGT

950336

36

21

P. flexilis

GGGT

1545509

36

136

P. gerardiana

GGT

1336725

33

98

P. krempfii

AAT

1569301

33

112

P. lambertiana N

ATT

1426598/1443555

33/37

99

P. lambertiana S

CCCT

1180289

36

113

P. longaeva

CCT

930078

33

89

P. merkusii

ATT

632411/585832

33/37

37

P. monophylla

GGT

1233556

33

145

P. monticola

CTGT

1460934

36

75

P. nelsonii

AAT

1139491/329838

33/37

81

P. parviflora

CCCT

920102

36

45

P. peuce

TACT

1402996

36

98

P. pinaster

GGT

1745043

33

77

P. ponderosa

CCT

16859450

33

44

P. resinosa

GGGT

2145134

36

48

P. rzedowskii

TACT

2419507

36

156

P. sibirica

CTGT

947216

36

60

P. squamata

TACT

1956311

36

97

P. strobus

GGGT

864197

36

42

P. taeda

CGT

1305703/1219158

33/37

90

P. thunbergii

AAT

1850050/2690553

33/37

104

P. torreyana ssp. torreyana

CTGT

1114111

36

76

P. torreyana ssp. insularis

ACGT

1157851

36

88


"/" indicates accession was multiplex sequenced in two sequencing runs. Median coverage is reported for determined positions (≥ 2× coverage depth) in reference-guided analysis.

Parks et al. BMC Biology 2009 7:84   doi:10.1186/1741-7007-7-84

Open Data