Additional file 4.
Supplemental Figure 3. Genomic locations of homoplastic single nucleotide polymorphisms and resulting phylogenetic tree. The genomic locations of both homoplastic and non-homoplastic SNPs are shown for each chromosome (A). Phylogenetic tree calculated using all 14,544 SNPs as in Figure 2b (B), and tree drawn using only the 6,331 homoplastic SNPs (C). Credibility values for all bifurcations are 1.00 unless otherwise noted. Topological changes resulting from only using homoplastic SNPs are indicated by a red branch.
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Pearson et al. BMC Biology 2009 7:78 doi:10.1186/1741-7007-7-78