Table 1

Genes sampled for Holometabola and out-groups.

Genes

Number of base pairs


AATS alanyl-tRNA synthetase

915


CAD carbamoylphosphate synthase domain

2057


PGD 6-phosphogluconate dehydrogenase

802


SNF sans fille

560


TPI triosephosphate isomerase

498


RNA Pol II RNA polymerase II 215 Kda subunit

899


Taxa


Order

Genus species

Genbank number


Dictyoptera

Blatella germanica

GQ265573, GQ265596

GQ265621, GQ265633

GQ265647, GQ265663


Thysanoptera

Frankliniella fusca

GQ265566, GQ265588

GQ265614, ---------------

GQ265641, GQ265657


Hymenoptera

Ametastegia equiseti

GQ265565, GQ265586*

GQ265587*, GQ265613

GQ265628, GQ265640

GQ265656


Hymenoptera

Muscidifurax raptorellus

GQ265578, GQ265604*

GQ265605*, GQ265606*

GQ265624, GQ265634

GQ265650, GQ265668


Hymenoptera

Apis mellifera

XM_395392, XM_393888,

XM_625087, XM_393440,

XR_014889, XM_623278


Coleoptera

Tribolium castaneum

XM_970534, EU677538,

XM_966958, XM_963178,

XM_970400, XM_968377


Coleoptera

Strangalia bicolor

GQ265574, GQ265599

---------------,---------------

---------------, GQ265664


Neuroptera

Austronevrorthus brunneipennis

GQ265575, GQ265600

---------------,---------------

GQ265649, GQ265665


Neuroptera

Kempynus sp.

GQ265567, GQ265589

GQ265615, ---------------

---------------,----------------


Neuroptera

Platystoechotes sp.

GQ265568, GQ265590

GQ265616, GQ265629

GQ265642, GQ265658


Raphidioptera

Mongoloraphidia martynovae

---------------, GQ265597

GQ265622, ---------------

---------------,---------------


Megaloptera

Nigronia sp.

---------------, GQ265598

GQ265623, ---------------

GQ265648, ---------------


Trichoptera

Hydropsyche phalerata

GQ265569, GQ265591

GQ265617, GQ265630

GQ265643, GQ265659


Lepidoptera

Heliothis virescens

GQ265570, GQ265592

GQ265618, ---------------

GQ265644, GQ265660


Lepidoptera

Bombyx mori

M55993, EU032656,

NM_001047060,

DQ202313,

NM_001126258, ---------------


Diptera

Anopheles gambiae

XM_318757, XM_310823,

XM_313091, XM_320869,

XM_321467, XM_313929


Diptera

Tipula abdominalis

GQ265563, GQ265584

GQ265611, GQ265626

---------------, ---------------


Diptera

Musca domestica

GQ265564, GQ265585

GQ265612, GQ265627

GQ265639, ---------------


Diptera

Drosophila melanogaster

NM_205934, X04813,

M80598, NM_078490,

NM_176587, NM_078569


Strepsiptera

Halictophagidae sp.

GQ265562, GQ265583

GQ265610, ---------------

GQ265638, GQ265655


Strepsiptera

Mengenilla sp.

---------------, GQ265580

---------------, ---------------

---------------, GQ265651


Mecoptera

Nannochorista sp.

GQ265571, GQ265593*

GQ265594*, GQ265619

GQ265631, GQ265645

GQ265661


Mecoptera

Panorpa sp.

GQ265572, GQ265595

GQ265620, GQ265632

GQ265646, GQ265662


Mecoptera

Boreus brumalis

GQ265576, GQ265601

---------------, ---------------

---------------, GQ265666


Mecoptera

Australobittacus sp.

GQ265577, GQ265602*,

GQ265603*, ---------------

---------------, GQ265667


Mecoptera

Microchorista philpotti

GQ265560, ---------------

GQ265608, ---------------

GQ265635, GQ265652


Mecoptera

Boreus sp.

---------------, GQ265582

---------------,---------------

GQ265637, GQ265654


Siphonaptera

Neotyphloceras sp.

GQ265579, GQ265607

---------------, ---------------

---------------, GQ265669


Siphonaptera

Ctenocephalides felis

GQ265561, GQ265581

GQ265609, GQ265625

GQ265636, GQ265653


Gene fragments that were unobtainable for this analysis are indicated by a horizontal line. Asterisks denote portions of CAD amplified in separate non-overlapping fragments.

Wiegmann et al. BMC Biology 2009 7:34   doi:10.1186/1741-7007-7-34

Open Data