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Open AccessHighly AccessResearch article

A comprehensive functional analysis of tissue specificity of human gene expression

Zoltán Dezső1* email, Yuri Nikolsky1* email, Evgeny Sviridov2 email, Weiwei Shi1 email, Tatiana Serebriyskaya2 email, Damir Dosymbekov2 email, Andrej Bugrim1 email, Eugene Rakhmatulin1 email, Richard J Brennan1 email, Alexey Guryanov2 email, Kelly Li3 email, Julie Blake3 email, Raymond R Samaha3 email and Tatiana Nikolskaya2 email

GeneGo, Inc. Renaissance Drive, St. Joseph, MI 49085, USA

Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkina Str, Moscow, Russia

Applied Biosystems, Inc, Lincoln Center Drive, Foster City, CA 94404, USA

author email corresponding author email* Contributed equally

BMC Biology 2008, 6:49doi:10.1186/1741-7007-6-49

Published: 12 November 2008

Additional files

Additional file 1:

List of all housekeeping genes

Format: XLS Size: 103KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 2:

List of all tissue-specific genes

Format: XLS Size: 69KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

Table for intersection between genes, ontologies

Format: XLS Size: 46KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 4:

Complete enrichment analysis for all housekeeping sets

Format: XLS Size: 33KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 5:

Canonical pathway maps and GeneGo networks essential for growth and viability

Format: XLS Size: 127KB Download file

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Additional file 6:

Enrichment analysis of the unique parts of the housekeeping gene sets

Format: DOC Size: 93KB Download file

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Additional file 7:

Complete enrichment analysis of all tissues in all four ontologies

Format: XLS Size: 97KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 8:

Gene Set Enrichment Analysis for selected tissues, ontologies

Format: XLS Size: 131KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 9:

Network topological properties of all housekeeping sets

Format: XLS Size: 21KB Download file

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Additional file 10:

Tissue-specific connectivity

Format: DOC Size: 91KB Download file

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Additional file 11:

Table for interactions mechanisms

Format: XLS Size: 22KB Download file

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Additional file 12:

Table for component analysis, protein class analysis for all tissues

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 13:

MC legend with protein classes

Format: DOC Size: 100KB Download file

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Additional file 14:

List of genes specific for tissue pairs and triplets

Format: XLS Size: 76KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 15:

Drug targets

Format: XLS Size: 32KB Download file

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Additional file 16:

Tissue-specificity distribution of all genes

Format: DOCX Size: 37KB Download file

Additional file 17:

Definition of tissue specific and housekeeping genes

Format: DOC Size: 78KB Download file

This file can be viewed with: Microsoft Word Viewer


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