Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

doi:10.1186/1741-7007-6-30

BMC Biology

Volume 6

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Shin H
Hirst M
Bainbridge MN
Magrini V
Mardis E
Moerman DG
Marra MA
Baillie DL
Jones SJ

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Hirst M
Bainbridge MN
Magrini V
Mardis E
Moerman DG
Marra MA
Baillie DL
Jones SJ
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Research article

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags

Heesun Shin¹^,2 , Martin Hirst² , Matthew N Bainbridge² , Vincent Magrini³ , Elaine Mardis³ , Donald G Moerman⁴ , Marco A Marra² , David L Baillie¹ and Steven JM Jones²

¹Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada

²Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Research Centre, British Columbia Cancer Agency, Vancouver, BC, Canada

³Genome Sequencing Center, Washington University School of Medicine, St Louis, USA

⁴Department of Zoology, University of British Columbia, Vancouver, BC, Canada

author email corresponding author email

BMC Biology 2008, 6:30doi:10.1186/1741-7007-6-30


Published:	8 July 2008

Additional files

Additional file 1:

Computationally predicted genes (WS170) partially confirmed by 454 expressed sequence tags.

Format: XLS Size: 21KB Download file

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Additional file 2:

Intergenic regions with five or more unique 454 expressed sequence tags.

Format: XLS Size: 24KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 3:

List of genes with 454 expressed sequence tags mapped within their introns.

Format: XLS Size: 29KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 4:

Genes with five or more intronic 454 expressed sequence tags only. *A more recent WormBase (WS180) added new genes within the introns where these expressed sequence tags map

Format: XLS Size: 14KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 5:

Genes with 5'-end 454 expressed sequence tags with over 90% alignment.

Format: XLS Size: 21KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 6:

List of genes with exon-intron boundary 454 expressed sequence tags.

Format: XLS Size: 49KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional file 7:

166 intergenic regions with both first larval stage 454 expressed sequence tags and first larval stage SAGE.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer