|
Differences between the gene repertoires of Oltmannsiellopsis and other UTC algal cpDNAs |
||||
| Genea |
Chlorella |
Oltmannsiellopsis |
Pseudendoclonium |
Chlamydomonas |
|
|
||||
| accD |
● |
● |
● |
○ |
| chlB |
● |
● |
○ |
● |
| chlI |
● |
● |
● |
○ |
| chlL |
● |
● |
○ |
● |
| chlN |
● |
● |
○ |
● |
| cysA |
● |
○ |
○ |
○ |
| cysT |
● |
○ |
○ |
○ |
| infA |
● |
● |
● |
○ |
| minD |
● |
● |
● |
○ |
| psaI |
● |
● |
● |
○ |
| psaM |
● |
● |
● |
○ |
| rpl12 |
● |
● |
● |
○ |
| rpl19 |
● |
● |
● |
○ |
| rpl32 |
● |
● |
● |
○ |
| ycf20 |
● |
● |
● |
○ |
| ycf62 |
● |
○ |
● |
○ |
| trnL(caa) |
● |
○ |
● |
○ |
| trnL(gag) |
● |
○ |
○ |
○ |
| trnR(ccg) |
● |
○ |
● |
○ |
| trnR(ccu) |
○ |
● |
● |
○ |
| trnS(gga) |
● |
○ |
○ |
○ |
| trnT(ggu) |
● |
○ |
○ |
○ |
|
a A filled/open circle denotes the presence/absence of a gene. Only the genes that are missing in one or more genomes are indicated. A total of 91 genes are shared by all compared cpDNAs: atpA, B, E, F, H, I, ccsA, cemA, clpP, ftsH, petA, B, D, G, L, psaA, B, C, J, psbA, B, C, D, E, F, H, I, J, K, L, M, N, T, Z, rbcL, rpl2, 5, 14, 16, 20, 23, 36, rpoA, B, C1, C2, rps2, 3, 4, 7, 8, 9, 11, 12, 14, 18, 19, rrf, rrl, rrs, tufA, ycf1, 3, 4, 12, trnA(ugc), C(gca), D(guc), E(uuc), F(gaa), G(gcc), G(ucc), H(gug), I(cau), I(gau), K(uuu), L(uaa), L(uag), Me(cau), Mf(cau), N(guu), P(ugg), Q(uug), R(acg), R(ucu), S(gcu), S(uga), T(ugu), V(uac), W(cca), Y(gua). | ||||
Pombert et al. BMC Biology 2006 4:3 doi:10.1186/1741-7007-4-3 |
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