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Key to organism acronyms |
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| Organism |
Abbreviation in Paper |
Abbreviation on websiteb |
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| Acidithiobacillus ferrooxidans ATCC 23270 |
Aferr |
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| Acinetobacter sp. ADP1 |
ACIN |
|
| Actinobacillus actinomycetemcomitans HK1651 |
Aact |
|
| Actinomyces naeslundii MG1 |
Anae |
|
| Actinoplanes teichomyceticus |
Atei |
|
| Agrobacterium tumefaciens strain C58 |
Atum |
|
| Amycolatopsis balhimycina |
Abal |
|
| Amycolatopsis orientalis |
Aori |
|
| Anabaena sp. PCC 7120 |
ANAB |
|
| Arabidopsis thaliana |
Atha |
|
| Archaeoglobus fulgidus DSM 4304 |
Aful |
Aful_1 |
| Azotobacter vinelandii |
Avin |
Avin_1 |
| Bacillis anthracis str. A2012 |
Bant |
|
| Bacillus cereus ATCC 14579 |
Bcer |
|
| Bacillus halodurans C-125 |
Bhal |
Bhal_2 |
| Bacillus stearothermophilus |
Bste |
|
| Bacillis subtilis |
Bsub |
|
| Bacillus thuringiensis israelensis |
Bthu |
|
| Bifidobacterium longum NCC2705 |
Blon |
Blon_1 |
| Blochmannia floridanus |
Bflo |
|
| Bordetella bronchisepticus |
Bbro |
|
| Burkholderia cepacia J2315 |
Bcep |
|
| Burkholderia fungorum LB400 |
Bfun |
|
| Burkholderia mallei ATCC 23344 |
Bmal |
|
| Burkholderia pseudomallei K96243 |
Bpse |
Bpse_6 |
| Campylobacter jejuni |
Cjej |
|
| Chromobacterium violaceum ATCC 12472 |
Cvio |
|
| Corynebacterium diphtheriae NCTC 13129 |
Cdip |
|
| Corynebacterium efficiens YS-314 |
Ceff |
|
| Corynebacterium glutamicum ATCC 13032 |
Cglu |
Cglu_1 |
| Desulfovibrio desulfuricans G20 |
Ddes |
|
| Desulfovibrio vulgaris subsp. vulgaris strain Hildenborough |
Dvul |
|
| Desulfuromonas acetoxidans |
Dace |
Dace_5 |
| Enterococcus faecalis V583 |
Efae_2 |
|
| Enterococcus faecium |
Efae_1 |
Efae_1 |
| Erwinia carotovoa subsp.atroseptica SCRI1043 |
Ecar |
|
| Escherichia coli K12 |
Ecol |
|
| Geobacter metallireducens GS-15 |
Gmet |
|
| Geobacter sulfurreducens PCA |
Gsul |
|
| Gloeobacter violaceus PCC 7421 |
Gvio |
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| Haemophilus influenzae Rd KW20 |
Hinf |
|
| Helicobacter hepaticus ATCC 51449 |
Hhep |
|
| Helicobacter pylori 26695 |
Hpyl |
|
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 |
Kpne |
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| Leifsonia xyli subsp. Xyli strain CTCB07 |
Lxyl |
|
| Listeria innocua Clip 11262 |
Linn |
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| Listeria monocytogenes EGD-e |
Lmon |
|
| Lotus corniculatus var. japonicus |
Lcor |
Lcor_3 |
| Lycopersicon esculentum |
Lesc |
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| Methanococcus jannaschii |
Mjan |
|
| Methanopyrus kandleri AV19 |
Mkan |
Mkan_1 |
| Methanosarcina barkeri strain Fusaro |
Mbar |
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| Methanothermobacter thermoautotrophicus strain Delta H |
Mthe |
Mthe_7 |
| Microbulbifer degradans 2–40 |
Mdeg |
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| Mycobacterium avium subsp. paratuberculosis strain k10 |
Mavi |
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| Mycobacterium bovis TrEMBL |
Mbov |
Mbov_2 |
| Mycobacterium leprae TN |
Mlep |
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| Mycobacterium tuberculosis CDC1551 |
Mtub |
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| Myxococcus xanthus DK 1622 |
Mxan |
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| Neisseria gonorrhoeae FA 1090 |
Ngon |
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| Nitrosomonas europaea ATCC 19718 |
Neur |
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| Nocardia farcinica IFM 10152 |
Nfar |
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| Nonomuraea sp. |
NONO |
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| Nostoc punctiforme PCC73102 |
Npun |
Npun_1 |
| Novosphingomonas aromaticivorans DSM 12444 |
Naro |
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| Oceanobacillus iheyensis THE831 |
Oihe |
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| Oryza sativa ssp. japonica |
Osat |
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| Pantoea agglomerans |
Pagg |
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| Pasteurella multocida subsp. multocida strain Pm70 |
Pmul |
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| Photorhabdus luminescens subsp. laumondii TT01 |
Plum |
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| Prochlorococcus marinus subsp. pastoris strain CCMP1378 |
Pmar_1 |
Pmar_3 |
| Prochlorococcus marinus MIT9313 |
Pmar_2 |
Pmar_10 |
| Propionibacterium acnes KPA171202 |
Pacn |
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| Pseudomonas aeruginosa PAO1 |
Paer |
Paer_1 |
| Pseudomonas fluorescens PfO-1 |
Pflu |
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| Pseudomonas putida KT2440 |
Pput |
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| Pseudomonas stutzeri |
Pstu |
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| Ralstonia eutropha JMP134 |
Reut |
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| Ralstonia solanacearum GMI1000 |
Rsol |
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| Rhodobacter capsulatus |
Rcap |
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| Rhodobacter sphaeroides 2.4.1 |
Rsph |
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| Rhodopseudomonas palustris CGA009 |
Rpal |
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| Rhodospirillum rubrum |
Rrub |
Rrub_1 |
| Rubrobacter xylanophilus DSM 9941 |
Rxyl |
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| Saccharomyces cerevisiae |
Scer |
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| Salmonella typhimurium LT2 |
Styp |
Styp_1 |
| Schizosaccharomyces pombe |
Spom |
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| Shewanella oneidensis MR-1 |
Sone |
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| Shewanella putrifacians |
Spu |
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| Staphylococcus aureus subsp. Aureus MW2 |
Saur |
Saur_2 |
| Streptococcus gordonii str. Challis |
Sgor |
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| Streptococcus pneumoniae R6 |
Spne |
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| Streptomyces avermitilis MA-4680 |
Save |
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| Streptomyces caeruleus |
Scae |
Scae_2 |
| Streptomyces coelicolor A3(2) |
Scoe |
Scoe_1 |
| Streptomyces lavendulae |
Slav |
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| Streptomyces pristinaespiralis |
Spri |
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| Streptomyces roseochromogenes subsp. Oscitans |
Sros |
Sros_1 |
| Streptomyces toyocaensis strain 7 |
Stoy |
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| Sulfolobus solfataricus P2 |
Ssol |
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| Sulfolobus tokodaii strain 7 |
Stok |
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| Synechococcus sp. WH8102 |
SYNE_1 |
SYNE_1 |
| Synechococcus sp. PCC7002 |
SYNE_2 |
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| Synechocystis sp. PCC6803 |
SYNE_3 |
SYNE_3 |
| Thermobifida fusca |
Tfus |
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| Thermosynechococcus elongates BP-1 |
Telo |
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| Trichodesmium erythraeum IMS101 |
Tery |
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| Tropheryma whipplei TW08/27 |
Twhi |
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| Vibrio cholerae O1 biovar eltor strain N16961 |
Vcho |
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| Vibrio parahaemolyticus RIMD 2210633 |
Vpar |
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| Wolinella succinogenes DSM 1740 |
Wsu |
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| Xanthomonas campestris pv. campestris strain ATCC 33913 |
Xcam |
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| Xylella fastidiosa 9a5c |
Xfas |
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| Yersinia enterocolitica (type 0:8) |
Yent |
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| Zymomonas mobilis subsp. mobilis ZM4 |
Zmob |
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aThe system of acronym usage is: the first letter (capital) is the first letter of the genus followed by the first three letters (lower-case) of the species. If there is no species designation the first four letters of the genus are used (all in capitals). Redundant 4-letter acronyms are distinguished by unique following numbers. See [74] for a comprehensive listing with hyperlinks to the Taxonomy database records and the GenBank records at NCBI. | ||
Song et al. BMC Biology 2005 3:13 doi:10.1186/1741-7007-3-13 |
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