|
Membership composition of Tryptophan Congruency Groupsa |
|
| TCG-1 |
[Corynebacterium diptheriae]b |
| [Corynebacterium glutamicum]b |
|
| Escherichia coli |
|
| Haemophilus influenzae |
|
| [Helicobacter pylori]b |
|
| Shewanella putrefaciens |
|
| Vibrio cholerae |
|
| Actinobacillus actinomycetemcomitans |
|
| Buchnera aphidicolac |
|
| Blochmannia floridanusc |
|
| [Corynebacterium efficiens]b |
|
| Erwinia carotovora |
|
| Klebsiella pneumoniae |
|
| Pasteurella multocida |
|
| Photorhabdus luminescens |
|
| Salmonella enterica |
|
| Shigella flexneri |
|
| Vibrio parahaemolyticus |
|
| Vibrio vulnificus |
|
| Yersinia pestis |
|
| TCG-2d |
Burkholderia fungorum |
| Methylococcus capsulatus |
|
| Neisseria meningitidis |
|
| Nitrosomonas europaea |
|
| Pseudomonas aeruginosa* |
|
| Pseudomonas syringae* |
|
| Ralstonia metallidurans |
|
| Thiobacillus ferrooxidans |
|
| Xanthomonas campestris |
|
| Xylella fastidiosa |
|
| Acinetobacter sp. |
|
| Azotobacter vinelandii* |
|
| Bordetella bronchisepticum |
|
| Bordetella parapertussis |
|
| Bordetella pertussis |
|
| Burkholderia cepacia |
|
| Burkholderia multivorans |
|
| Chromobacterium violaceum |
|
| Microbulbifer degradans |
|
| Neisseria gonorrhoeae |
|
| Pseudomonas fluorescens* |
|
| Pseudomonas putida* |
|
| Psychrobacter sp. |
|
| Ralstonia solanacearum |
|
| Xanthomonas axonopodis |
|
| TCG-3 |
Caulobacter crescentus |
| Rhodobacter sphaeroides |
|
| Sphingomonas aromaticivorans |
|
| Agrobacterium tumefaciens |
|
| Bradyrhizobium japonicum |
|
| Brucella melitensis |
|
| Brucella suis |
|
| Rhizobium loti |
|
| Rhodopseudomonas palustris |
|
| Sinorhizobium meliloti |
|
| TCG-4 |
Anabaena (Nostoc) sp. PCC 7120 |
| Nostoc punctiforme |
|
| Prochlorococcus marinus CCMP 1986 (MED4) |
|
| Synechococcus sp. WH8102 |
|
| Synechocystis sp. PCC 6803 |
|
| Anabaena variabilis ATCC 29413 |
|
| Crocosphaera watsonii WH 8501 |
|
| Gloeobacter violaceus PCC 2471 |
|
| Prochlorococcus marinus CCMP1375 (SS120) |
|
| Prochlorococcus marinus MIT9313 |
|
| Synechococcus elongatus PCC 7942 |
|
| Thermosynechococcus elongatus BP-1 |
|
| Tricodesmium erythraeum |
|
| TCG-5e |
Streptomyces coelicolor |
| Mycobacterium tuberculosis |
|
| Thermomonospora fusca |
|
| Bifidobacterium longum |
|
| Mycobacterium avium |
|
| Mycobacterium bovis |
|
| Mycobacterium leprae |
|
| Mycobacterium smegmatis |
|
| Streptomyces avermitilis |
|
| TCG-6 |
Bacillus halodurans |
| Bacillus stearothermophilus |
|
| Bacillus subtilis |
|
| Oceanobacillus iheyensis |
|
| TCG-7 |
Bacillus anthracis |
| Lactococcus lactis |
|
| Listeria monocytogenes |
|
| Staphylococcus aureus |
|
| Streptococcus pneumoniae |
|
| Bacillus cereus |
|
| Listeria innocua |
|
| Staphylococcus epidermidis |
|
| Streptococcus gordonii |
|
| Streptococcus mutans |
|
|
aEach tryptophan congruency group (TCG) defined by the concatenated tree for Trp proteins (Fig. 2) is congruent with the color-coded subtree section within the 16S rRNA tree (Fig. 1). Organisms that are included in the concatenated tree of Fig. 2 are indicated in boldface type, whereas additional organisms not included in the concatenated tree but that were qualitatively determined to belong to a given TCG are indicated in regular type. bTCG members originating by LGT are indicated within brackets and indented. cInsect symbionts. dThe five organisms marked with asterisks form a distinctive subclade that is, in fact, not a "pure" component of TCG-2 because of the LGT origins of trpEa and trpEb from TCG-3 (see text). eAll members of TCG-5 lack trpC and presumably utilize a dual-pathway hisA (priA) for this function. | |
Xie et al. BMC Biology 2004 2:15 doi:10.1186/1741-7007-2-15 |
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