Table 5

Evaluation of homology modeling templates

Evaluation method

Criteria

Points


Sequence identity for BLAST, RPS-BLAST and HHSearch

20% to 40%

1


40% to 60%

2


60% to 80%

3


80% to 90%

4


90% to100%

5


HHsearch probability

80% to 85%

1


85% to 90%

2


90% to 99%

3


99% to 99.99%

4


99.99% to 100%

5


BLAST and RPS-BLAST e-value

1e-6 to 1e-2

1


1e-6 to 1e-18

2


1e-18 to 1e-54

3


< 1e-54

4


Consensus bonus

Predicted by two methods

1


Predicted by three methods

2


Cong and Grishin BMC Biology 2012 10:82   doi:10.1186/1741-7007-10-82

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