Table 1

An example of data from a contact-type scoring matrix

ALA

ARG

ASN

ASP

CYS

GLN

GLU

GLY

HIS

ILE

LEU

LYS

MET

PHE

PRO

SER

THR

TRP

TYR

VAL


ALA

0.27

-0.12

-0.19

-0.23

-0.06

-0.21

-0.39

0.11

-0.01

0.32

0.31

-0.42

0.00

0.26

-0.05

-0.05

0.05

0.12

0.19

0.35

ARG

-0.33

-0.38

-0.24

-0.30

-0.43

-0.36

-0.15

-0.22

-0.03

0.00

-0.72

-0.31

-0.01

-0.18

-0.27

-0.22

-0.10

-0.03

-0.01

ASN

-0.04

-0.30

-0.28

-0.34

-0.57

-0.09

-0.19

-0.02

-0.14

-0.47

-0.30

-0.01

-0.20

-0.13

-0.09

-0.10

0.02

-0.07

ASP

-0.44

-0.41

-0.48

-0.70

-0.18

-0.19

-0.14

-0.22

-0.43

-0.44

-0.15

-0.29

-0.28

-0.24

-0.19

-0.08

-0.15

CYS

0.67

-0.33

-0.63

-0.08

-0.02

0.15

0.12

-0.57

-0.06

0.19

-0.19

-0.13

-0.11

0.03

0.07

0.14

GLN

-0.36

-0.67

-0.26

-0.27

-0.10

-0.09

-0.64

-0.34

-0.08

-0.26

-0.28

-0.23

-0.13

-0.08

-0.11

GLU

-0.77

-0.45

-0.39

-0.23

-0.27

-0.53

-0.57

-0.27

-0.46

-0.51

-0.44

-0.38

-0.23

-0.25

GLY

0.16

0.02

0.16

0.08

-0.43

-0.10

0.15

-0.04

-0.01

0.04

0.08

0.14

0.19

HIS

0.16

0.09

0.07

-0.55

-0.11

0.16

-0.08

-0.05

-0.03

0.11

0.16

0.09

ILE

0.71

0.55

-0.13

0.24

0.55

-0.03

0.09

0.20

0.28

0.43

0.58

LEU

0.58

-0.26

0.15

0.49

-0.01

0.02

0.12

0.27

0.35

0.51

LYS

-0.63

-0.56

-0.23

-0.49

-0.47

-0.41

-0.45

-0.20

-0.22

MET

0.24

0.25

-0.23

-0.20

-0.11

0.09

0.14

0.16

PHE

0.60

0.04

0.10

0.16

0.39

0.47

0.48

PRO

-0.04

-0.15

-0.11

0.06

0.09

0.02

SER

-0.04

-0.03

0.01

0.07

0.07

THR

0.06

0.05

0.13

0.21

TRP

0.48

0.35

0.26

TYR

0.42

0.37

VAL

0.59


An example of one of the contact-type scoring matrices used in this work. The scores are defined as described in the Methods Section. In this matrix residue-residue contacts were defined using a 12 Å distance threshold between Cβ atoms and using a sequence separation filter to remove short-range interactions.

Bolser et al. BMC Structural Biology 2008 8:53   doi:10.1186/1472-6807-8-53

Open Data