|
Comparison of the function performances. |
|||||||
| decoy set |
protein |
DFIRE-A |
DFIRE-B |
DOPE |
RAPDF |
PC2CA |
DFMAC |
|
|
|||||||
| 4state_reduced |
1ctf |
1 |
1 |
1 |
1 |
1 |
1 |
| 4state_reduced |
2cro |
1 |
2 |
1 |
1 |
1 |
1 |
| 4state_reduced |
4rxn |
1 |
19 |
1 |
1 |
667 |
1 |
| fisa |
2cro |
1 |
1 |
1 |
14 |
1 |
1 |
| fisa_casp3 |
1bl0 |
1 |
3 |
1 |
1 |
1 |
8 |
| lattice_ssfit |
1dkt-A |
1 |
1 |
1 |
1 |
1 |
1 |
| lattice_ssfit |
1pgb |
1 |
1 |
1 |
1 |
1 |
1 |
| lmds |
1b0n-B |
430 |
261 |
34 |
359 |
1 |
1 |
| lmds |
1dtk |
1 |
5 |
1 |
116 |
2 |
70 |
| lmds |
1shf-A |
1 |
1 |
1 |
1 |
1 |
1 |
| lmds |
4pti |
1 |
1 |
1 |
157 |
1 |
3 |
|
|
|||||||
| average |
40.0 |
26.9 |
4.0 |
59.4 |
61.6 |
8.1 |
|
| correct |
10 |
6 |
10 |
7 |
9 |
8 |
|
|
The rank of the native structure identified by respective functions is shown for the targets listed. The results of DFIRE-A, DFIRE-B and RAPDF were from the literature [7]. The results of DOPE were from [15]. The results of PC2CA were from [16]. The average rank (average) and the number of correctly identified native structures (correct) in 11 targets are shown. | |||||||
Makino and Itoh BMC Structural Biology 2008 8:46 doi:10.1186/1472-6807-8-46 |
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