|
The 7 protein subsets from the MOULDER testing set |
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| PDB ID |
SS type |
L |
RMSD range |
Median RMSD |
avg.ΔRMSD (best, rank.) |
ΔRMSD |
|
|
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| 2mtaC |
α |
81 |
2.2–42.7 |
6.7 |
0.56 (0.30, 5) |
0.26 |
| 1onc_ |
α, β |
101 |
2.2–22.8 |
10.5 |
0.37 (0.25, 8) |
0.30 |
| 1bbhA |
α |
127 |
2.5–20.8 |
6.5 |
0.51 (0.05, 17) |
0.76 |
| 1mdc_ |
β |
130 |
1.9–16.4 |
9.3 |
0.37 (0.13, 8) |
0.02 |
| 1dxtB |
α |
143 |
2.0–34.1 |
7.2 |
0.56 (0.31, 3) |
0.08 |
| 2fbjL |
β |
210 |
2.4–22.5 |
8.8 |
1.51 (0.32, 19) |
0.53 |
| 2cmd_ |
α, β |
310 |
2.5–20.2 |
5.8 |
1.26 (0.31, 13) |
1.58 |
|
Particular columns contain: the PDB code, the secondary structure type, the protein length, the range of Cα RMSD (Å), the median of RMSD (Å), the average ΔRMSD of our method, in the brackets: the average ΔRMSD of the best method [12] and a ranking – the number of methods that outperformed our procedure (23 individual assessment methods were tested, SVMod that uses a composite score from the individual methods was not taken into account [12]), the ΔRMSD on the whole subset. | ||||||
Kmiecik et al. BMC Structural Biology 2007 7:43 doi:10.1186/1472-6807-7-43 |
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