Table 5 |
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Examples for dealing with SSE variability in a block. Ambiguous regions are highlighted in bold and italics: |
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SSEs in some blocks |
Given consensus |
Explanation |
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HLLSSLLLL HLLLLLLLL HLLHSLLLL |
HL |
Identical flanks, ambiguous region contains flank SSE. |
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HLLLLTLLL HLLLLTLLL HLLTTTLLL |
HLTL |
Different flanks, ambiguous region contains only flank SSEs. |
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HLLLLTLLL HLLLSTLLL HLLTTTLLL |
No consensus |
Different flanks, strand is not one of the flank SSEs. |
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HLLSSSLLLL HLLLLLLLLL HLLHSSLLLL |
No consensus |
Three consecutive ambiguous positions. |
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HLLTSTLLLL HLLTHTLLLL HLLTLTLLLL |
No consensus |
Identical flanks, ambiguous region does not contain flank SSE. |
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Sitbon and Pietrokovski BMC Structural Biology 2007 7:3 doi:10.1186/1472-6807-7-3 |
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