Table 2

Features selected by the entropy based method.

k-spaced AA pairs1


k = 0

k = 1

k = 2

k = 3

k = 4

k = 5

k = 6

k = 7

k = 8

k = 9


DF

AK

DI

AD

AI

DC

DI

ED

DP

AC

EF

FH

ED

AI

AV

HD

FF

GL

EN

EL

EL

KI

EK

AV

AY

IE

FG

PG

GG

KF

KE

KY

FK

GG

DG

NQ

HP

PS

KC

KG

LI

LL

GG

KQ

DS

PG

IL

TI

RI

LL

LQ

GR

LI

EK

QQ

QP

VI

TV

PA

PM

GS

LS

ER

RV

TL

VN

VR

QT

VH

KL

PW

HQ

VL

VR

VI

VL

KS

SG

LL

VV

YC

VP

LL

YH

LV

YL

PS

MV

QQ

PD

VI

SQ

VK

TK

VL


1k-spaced AA pairs represent frequency of the AA pairs that are separated by k other residues in the sequence; for k = 0 the pairs are equivalent to dipeptides.

Chen et al. BMC Structural Biology 2007 7:25   doi:10.1186/1472-6807-7-25

Open Data