Research article
Secondary structure spatial conformation footprint: a novel method for fast protein structure comparison and classification
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* Corresponding author: Teresa M Przytycka przytyck@mail.nih.gov
1 Department of Computer Science, University of Maryland,College Park, MD 20742, USA
2 Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742,USA
3 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
BMC Structural Biology 2006, 6:12 doi:10.1186/1472-6807-6-12
Published: 8 June 2006Additional files
Additional File 2:
SCOP 1.69 nearest neighbor classification. An Excel workbook that contains nearest neighbor classification accuracies.
Format: XLS Size: 746KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 3:
SCOP 1.69 coverage versus error for the fold level.
Format: EPS Size: 24KB Download file
Additional File 4:
SCOP 1.69 coverage versus error for the super-family level.
Format: EPS Size: 24KB Download file
Additional File 5:
SCOP 1.69 coverage versus error for the family level.
Format: EPS Size: 24KB Download file
Additional File 6:
CATH 2.6 nearest neighbor classification. An Excel workbook that contains nearest neighbor classification accuracies. The PRIDE2 data is not shown due to technical difficulties of running the program on the CATH dataset.
Format: XLS Size: 293KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 7:
CATH 2.6 coverage versus error for the topology level. The PRIDE2 data is not shown due to technical difficulties of running the program on the CATH dataset.
Format: EPS Size: 21KB Download file
Additional File 8:
CATH 2.6 coverage versus error for the homologous super-family level. The PRIDE2 data is not shown due to technical difficulties of running the program on the CATH dataset.
Format: EPS Size: 21KB Download file
Additional File 1:
SCOP 1.65 nearest neighbor classification. An Excel workbook that contains nearest neighbor classification accuracies.
Format: XLS Size: 556KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 9:
SCOP 1.65 list of domains in the 40%-id dataset.
Format: SCOP Size: 47KB Download file
Additional File 10:
SCOP 1.69 list of domains in the 40%-id dataset.
Format: SCOP Size: 61KB Download file
Additional File 11:
CATH 2.6 list of domains in the 35%-id dataset.
Format: CATH Size: 44KB Download file
Additional File 12:
The Python code for the SSEF method. An archive that contains the Python code and auxiliary files necessary to compute the SSE footprint from a PDB file of a structure.
Format: TAR Size: 300KB Download file