Table 1

DS-QMnpp for HLA-DP2 binding prediction.

p1

p2

p3

p4

p5

p6

p7

p8

p9


Ala

-0.101

0.068

0.040

0.000

0.049

-0.079

-0.089

0.189

0.102

Arg

0.036

-0.017

0.030

0.411

0.445

0.073

0.379

-0.031

-0.753

Asn

-0.046

0.011

-0.122

0.009

-0.116

0.090

-0.037

-0.007

0.148

Asp

-0.263

-0.071

-0.493

-0.237

-0.403

-0.458

-0.408

-0.287

-0.167

Cys

-0.065

0.002

-0.173

-0.076

-0.146

-0.076

-0.081

-0.027

0.169

Gln

0.027

-0.003

-0.163

0.053

-0.048

0.086

0.006

-0.139

0.146

Glu

-0.208

-0.045

-0.559

-0.169

-0.417

-0.383

-0.380

-0.379

-0.124

Gly

-0.202

0.004

-0.143

-0.035

0.016

-0.187

-0.150

0.149

0.007

His

0.150

0.179

0.015

0.002

-0.018

0.235

-0.055

-0.027

-0.132

Ile

0.105

0.085

-0.036

-0.006

-0.025

0.097

0.071

0.033

-0.050

Leu

0.130

0.056

0.111

0.113

-0.021

0.107

0.167

0.081

-0.044

Lys

-0.009

-0.071

-0.031

0.428

0.597

0.083

0.592

-0.139

0.247

Met

0.064

0.037

-0.102

0.002

-0.123

0.083

-0.007

-0.091

0.187

Phe

0.469

0.101

0.269

0.070

0.043

0.542

0.050

0.177

-10.000

Pro

-0.531

-0.762

0.441

-0.572

0.394

-10.000

-10.000

0.621

-10.000

Ser

-0.202

-0.019

-0.143

-0.090

-0.157

-0.194

-0.206

-0.071

0.074

Thr

-0.105

0.054

0.071

-0.077

-0.126

-0.153

-0.107

-0.043

0.144

Trp

0.375

0.238

0.375

0.084

0.093

-0.302

0.238

0.041

-10.000

Tyr

0.324

0.054

0.395

0.093

-0.038

0.411

0.056

-0.187

-10.000

Val

0.052

0.099

0.218

-0.003

0.002

0.026

-0.039

0.137

0.047


Binding scores are normalized position per position. Non-binding amino acids were assigned penalty score -10.000. Values above 0.100 are emboldened.

Patronov et al. BMC Structural Biology 2011 11:32   doi:10.1186/1472-6807-11-32

Open Data