Table 2 |
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|
Comparisons between apo and holo heme protein structures |
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|
holo-chain |
volume (Å3) |
surface area (Å2) |
Rvsa |
apo-chain |
volume (Å3) |
surface area (Å2) |
Rvsa |
sequence identity% |
RMSD (Å) |
|
|
|||||||||
|
1KBIA |
458.1 |
432 |
1.060 |
1SZFB |
1039.3 |
708.3 |
1.468 |
99 |
0.40 |
|
1N45A |
1634.7 |
1139.3 |
1.435 |
1S8CD |
845.1 |
634.4 |
1.332 |
100 |
0.86 |
|
1N5UA |
* |
* |
* |
3CX9A |
* |
* |
* |
100 |
0.60 |
|
2ITFA |
721.7 |
521 |
1.385 |
2ITEB |
803.4 |
551 |
1.457 |
100 |
0.60 |
|
2NWBA |
* |
* |
* |
1ZEEB |
* |
* |
* |
96 |
0.75 |
|
2OFRX |
1211.1 |
857.4 |
1.413 |
2OFMX |
783.3 |
642.7 |
1,219 |
100 |
1.03 |
|
2R7AA |
1362.6 |
963.4 |
1.414 |
2RG7D |
1558.1 |
1019.6 |
1.528 |
100 |
0.91 |
|
2ZDOA |
808.7 |
553.9 |
1.460 |
1XBWD |
766.9 |
544.2 |
1.409 |
99 |
0.59 |
|
3CQVA |
1638.3 |
1099 |
1.490 |
2V7CA |
537.1 |
436.2 |
1.232 |
94 |
2.32 |
|
3EMMA |
399 |
383.1 |
1.042 |
2A13A |
910.8 |
635.2 |
1.434 |
100 |
0.53 |
|
|
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|
a Rvs: ratio between volume and surface area * Data not shown because CASTp predicts a very large cavity, covering several pockets. |
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|
Li et al. BMC Structural Biology 2011 11:13 doi:10.1186/1472-6807-11-13 |
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